The aquatic environment and zoobenthos are closely related in a water body. In recent years, the use of zoobenthos to evaluate water quality is getting more attention as this approach is less polluting and less costly. This study was conducted to assess the diversity of zoobenthos in the canals affected by leachate and agricultural activities. Five sediment samples were collected in two campaigns, one in April and one in October 2018. Water samples were also collected at the same time for zoobenthos to assess the water quality and serve as a reference for assessing the effectiveness of using zoobenthos as water quality indication. In total, 17 species of zoobenthos belonging to six families and four classes were identified, of which Limnodrilus hoffmeisteri and Tendipes species being present regularly at sampling sites through the surveys. The calculations of the Shannon-Wiener diversity index (H'), rapid bioassessment protocol (RBP III), and associated average score per taxon (ASPT) indices based on species composition indicated that the water environment surrounding the landfill was moderately to severely polluted. However, the water quality index (WQI) calculated based on the physical and chemical properties shows that the level of water pollution in canals was less than that evaluated using zoobenthos. This can be explained by the fact that zoobenthos also affected the properties of sediments which depend on the water column. The findings in this study showed that the aquatic environment around the landfill is heavily contaminated as result of waste disposal and agricultural activities. The use of both zoobenthos combined with physical and chemical indicators could be useful in assessing the canals’ water status.